Siddhartha Roy

Siddhartha Roy (born 1 April 1954) is an Indian Chemical and Structural biologist, biophysicist, former director of the Indian Institute of Chemical Biology and the former director (officiating) of Bose Institute. Widely known for his studies on Gene Regulation, Peptidomimetics, bacteriophage lambda and protein synthesis, he is an elected fellow of the Indian Academy of Sciences and the Indian National Science Academy. In 1999, the Council of Scientific and Industrial Research, the apex agency of the Government of India for scientific research, awarded him the Shanti Swarup Bhatnagar Prize for Science and Technology, for his contributions to Biological sciences.

Early life, education and career Roy was born in the Indian state of West Bengal.

He completed his schooling at Ballygunge Government High School, then obtained a first class honours degree in chemistry (BSc Hons) from Presidency College, Calcutta in 1974 and did his doctoral studies at the University of Delaware under the guidance of Prof. Roberta F. Colman to secure a PhD in 1981. After completing 10 years as the director of IICB, he returned to Bose Institute in 2014 as a senior professor and dean of studies. While at IICB, he has served the nation in several different high-level capacities such as the founder-director-in-charge of the National Institute of Pharmaceutical Education and Research, Kolkata (NIPER) (2007–14), the cluster director of 11 Biological institutes of the Council of Scientific and Industrial Research (CSIR) (2009–14), member of the governing body of the CSIR and as a visiting professor at Osaka University (2012). He has served as the president of the West Bengal Academy of Science and Technology. He is the founder-president of the Chemical Biology Society of India. He currently serves as a member of the board of directors of the International Chemical Biology Society. He also served as the director (officiating) of Bose Institute during the critical Centenary year. In addition, Roy played the very crucial role as an advisory committee member to successfully conduct the 'International Conference on Genome Biology 2019' hosted by the School of Biological Sciences (SBS), Madurai Kamaraj University.

Research Roy's researches during his stint in the US was on protein folding and nuclear magnetic resonance studies of DNA Through his collaborative work with Sankar Adhya in 1998, he elucidated the role of differential contact in the transcription regulation mechanism and demonstrated the theory in many genetic regulatory circuits.

Roy has published his research work through a number of articles published in peer-reviewed journals and ResearchGate, an online repository of scientific papers, has listed 155 of them. He is the Co-author of "Chemical Biology of the Genome" published by Elsevier/AP. He is a joint editor of Subcellular Biochemistry, volume on Proteins: Structure, Function, and Engineering published by Plenum Press, New York, USA and Protein-Protein interaction Regulators published by Royal Society of Chemistry, UK. He has guided around 30 scholars in their doctoral studies. He is a former president of the West Bengal Academy of Science and Technology and is its incumbent vice president.

Awards and honours The Indian Academy of Sciences elected Roy as their fellow in 1996 and he received the J. C. Bose National Fellowship of the Science and Engineering Research Board as well as the Tata Innovation Fellowship of the Department of Biotechnology the same year.

Books Gene Expression and its Regulation—An Evolutionary Perspective by Siddhartha Roy. 2025. Published by Springer-Nature. Chemical Biology of the Genome by Siddhartha Roy & Tapas Kundu. 2021. Published by Elsevier/AP. Protein-Protein interaction Regulators, edited by Siddhartha Roy & Haian Fu. 2021. Published by Royal Society of Chemistry, UK Subcellular Biochemistry, Volume 24 on Proteins: Structure, Function, and Engineering, edited by B B Biswas & Siddhartha Roy. 1995. Published by Plenum Press, New York, USA.

Selected bibliography

A peptide-based synthetic transcription factor selectively activates transcription in a mammalian cell. Roy, K., Mazumder, A., Ghosh, P., Naiya, G., Ghosh, B., & Roy, S.* (2018) Chem Commun. 54, 1611-1614.https://doi.org/10.1039/C7CC09279B A Peptide-based Synthetic Transcription Factor Selectively Down-regulates the Proto-oncogene CFOS in Tumour Cells and Inhibits Proliferation. Chakraborty, M. and Roy, S.* (2016) Chem Commun, 53, 376-379.https://doi.org/10.1039/C6CC08086C Specific Sequence of a Beta-turn in Human La Protein May Contribute to Species Specificity of Hepatitis C Virus. Kumar, A., Manna, AK., Ray, U., Mullick, R., Basu, G., Das, S., & Roy, S.* (2014) J Virol, 88, 4319-27. https://doi.org/10.1128/jvi.00049-14 A Synthetic Peptide Mimic of l-Cro shows Sequence-Specific Binding in vitro and in vivo. Mazumder, A., Maiti, A., Roy, K., & Roy, S.* (2012) ACS Chem Biol, 7, 1084-94. https://doi.org/10.1021/cb200523n Differential recognition of phosphorylated transactivation domains of p53 by different p300 domains. Polley, S., Guha, S., Roy, NS., Kar, S., Sakaguch,i K., Chuman, Y., Swaminathan, V., Kundu, T., & Roy, S.* (2008) J Mol Biol, 376, 8-12. https://doi.org/10.1016/j.jmb.2007.11.082 Switching DNA-binding specificity by unnatural amino acid substitution. Maiti, A., & Roy, S.* (2005) Nucleic Acids Res, 33, 5896-903. https://doi.org/10.1093/nar/gki899 Asynchronous basepair openings in transcription initiation: regulation by enhancing the rate limiting step. Roy, S., Lim, HM., & Adhya, S. (2004) EMBO J, 23, 869-75. https://doi.org/10.1038/sj.emboj.7600098 Fluorescence quenching methods to study protein-nucleic acid interaction. Roy, S.* (2004) Methods Enzymol, 379, 175-87. https://doi.org/10.1016/S0076-6879(04)79010-2 2-Aminopurine as a probe for Basepair opening during Transcription Initiation. Roy, S.* (2003) Methods Enzymol, 370, 568-76. https://doi.org/10.1016/S0076-6879(03)70048-2 Glutamate counteracts the denaturing effect of urea through its effect on the denatured state. Mandal, AK., Samaddar, S., Banerjee, R., Lahiri, S., Bhattacharyya, A., & Roy, S.* (2003) J Biol Chem, 278, 36077-84. https://doi.org/10.1074/jbc.M211207200 Solvation Change and Ion release During Aminoacylation by Aminoacyl-tRNA synthetases. Bannerjee, R., Mandal, AK., Shah, R., Guha, S., Samaddar, S., Bhattacharyya, A., & Roy, S.* (2003) Nucleic Acids Res, 31, 6035-42. https://doi.org/10.1093/nar/gkg779 Aib-based peptide backbone as scaffolds for helical peptide mimics. Banerjee, R., Basu, G.,* Roy, S.,* & Chene, P. (2002) J Pept Res, 60, 88-94.https://doi.org/10.1034/j.1399-3011.2002.201005.x DnaK-sigma32 interaction is temperature dependent: Implication for the mechanism of heat-shock response. Chattopadhyay, R., & Roy, S.* (2002) J Biol Chem, 277, 33641-7. https://doi.org/10.1074/jbc.M203197200 Effect of phosphorylation on the structure and fold of transactivation domain of p53. Kar S., Sakaguchi, K., Shimohigashi, Y., Samaddar, S., Banerjee, R., Basu, G., Swaminathan, V., Kundu, TK., & Roy, S.* (2002) J Biol Chem, 277, 15579-85. https://doi.org/10.1074/jbc.M106915200 Effect of osmolytes and chaperone-like action of P-protein on folding of nucleocapsid protein of Chandipura virus. Majumder A, Basak S, Raha T, Chowdhury SP, Chattopadhyay D, Roy S.* (2001) J Biol Chem. 276, 30948-55.https://doi.org/10.1074/jbc.M011705200 A "master" in base unpairing during isomerization of a promoter upon RNA polymerase binding. Lim, HM., Lee, HJ., Roy, S., & Adhya, S. (2001) Proc Natl Acad Sci (U S A), 98, 14849-52. https://doi.org/10.1073/pnas.261517398 Damage-mediated phosphorylation of human p53 threonine 18 through a cascade mediated by a casein 1-like kinase. Effect on Mdm2 binding. Sakaguchi, K., Saito, S., Higashimoto, Y., Roy, S., Anderson, CW., & Appella, E. (2000) J Biol Chem, 275, 9278-83. https://doi.org/10.1074/jbc.275.13.9278 Interaction of Gal repressor with inducer and operator: induction of gal transcription from repressor-bound DNA. Chatterjee, S., Zhou, YN., Roy, S., & Adhya, S. (1997) Proc Natl Acad Sci (USA), 94 2957-2962. https://doi.org/10.1073/pnas.94.7.2957 A fluorescence anisotropy study of tetramer-dimer equilibrium of l-repressor and its implications for function. Banik, U., Mandal, N.C., Bhattacharyya, B., & Roy, S.* (1993) J Biol Chem, 268, 3938-3943. https://doi.org/10.1016/S0021-9258(18)53562-6 An operator induced conformational change of C-terminal domain of l-repressor. Saha, R., Banik, U., Mandal, N.C., Bhattacharyya, B., & Roy, S.* (1992) J Biol Chem, 267, 5862-5867. https://doi.org/10.1016/S0021-9258(18)42633-6 Solid state deuterium NMR study of thymidine. Base rigidity and ribose ring flexibility in deoxynucleosides. Hiyama, Y., Roy, S., Cohen, JS. & Torchia, DA. (1989) J Am Chem Soc, 111, 8609-8613. https://doi.org/10.1021/ja00205a008 New enzymic synthesis of 2'-deoxynucleoside-2',2'-d2 and the determination of sugar ring flexibility by solid-state deuterium NMR. Roy, S.,* Hiyama, Y., Torchia, DA., & Cohen, JS. (1986) J Am Chem Soc, 108, 1675-1678. https://doi.org/10.1021/ja00267a043 NMR study of slowly exchanging protons in yeast tRNAasp. Figueroa, N., Keith, G., Leroy, J.L., Plateau, P., Roy, S., & Gueron, M. (1983) Proc Natl Acad Sci (USA), 80, 4330-4333. https://doi.org/10.1073/pnas.80.14.4330 Nuclear Overhauser effect study of yeast tRNAvalI:Evidence of uridine-Pseudouridine base pairing. Schejter, E., Roy, S., Sanchez, V., & Redfield, AG. (1982) Nucleic Acids Res, 10, 8297-8305. https://doi.org/10.1093/nar/10.24.8297 Procedure for C2 deuteration of nucleic acids and determination of AY 31 pseudouridine conformation by nuclear overhauser effect. Roy, S., Papastavros, M.Z., & Redfield, AG. (1982) Nucleic Acids Res, 10, 8341-8349. https://doi.org/10.1093/nar/10.24.8341 Roy, S., & Redfield, AG. Nuclear Overhauser effect study and assignment of D stem and reverse hoogsteen base pair proton of yeast tRNAasp. (1981) Nucleic Acids Res, 9, 7073-7083. https://doi.org/10.1093/nar/9.24.7073 Hydrophobic basis of packing in globular proteins. Rose, GD. & Roy, S. (1980) Proc Natl Acad Sci (USA), 77, 4643-4647. https://doi.org/10.1073/pnas.77.8.4643

Patents The list is incomplete.